Who We Are

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Team

The Center for Open Bioimage Analysis brings together the Carpenter laboratory at the Broad Institute and the Eliceiri laboratory at the University of Wisconsin-Madison, and in doing so brings together the two most popular open source bioimage analysis projects, ImageJ (including ImageJ2 and FIJI) and CellProfiler.

 

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Organizational Structure

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TR&D1 (Deep Learning)

 

Component leads: 

Alice Lucas
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)

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Additional team:

Allen Goodman* 
Ed Evans
Curtis Rueden* ​

* Funded by CZI

 

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TR&D2 (algorithm accessibility)

 

Component leads: 

Mark Hiner
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)

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Additional team:

Ed Evans
Alice Lucas
Curtis Rueden* ​

 

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Driving Biological Projects (DBPs)

 

Component leads: 

Beth Cimini
Ellen T.A. Dobson
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)

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Additional team:

David Stirling​
Nasim Jamali
Pearl Ryder

Each DBP will be assigned a DBP lead from among this team

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Community Engagement

 

Component leads: 

Ellen T.A. Dobson
Beth Cimini
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)

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Additional team:

Nasim Jamali
Alice Lucas
David Stirling
Pearl Ryder
Hamdah Abbasi

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External Advisory Committee
 

The External Advisory Committiee (EAC) for the Center for Open Bioimage Analysis gives input into trends and directions for the center to pursue in our technology development, driving biological projects, and community engagement.

EAC Members:


Rick Horwitz (Chair) (Allen Institute for Cell Science)

Anna Kreshuk (EMBL Heidelberg)

Jennifer Lippincott-Schwartz (HHMI-Janelia)

Emma Lundberg (KTH Royal Institute of Technology, Sweden)

Kota Miura (Max Planck BioImaging and NEUBIAS)

Badri Roysam (University of Houston)

Ross Whitaker (University of Utah)