Who We Are
Team
The Center for Open Bioimage Analysis brings together the Cimini and Carpenter laboratories at the Broad Institute and the Eliceiri laboratory at the University of Wisconsin-Madison, and in doing so brings together the two most popular open source bioimage analysis projects, ImageJ (including ImageJ2 and FIJI) and CellProfiler.
Organizational Structure
TR&D1 (Deep Learning)
Component leads:
Alice Lucas
Beth Cimini, PI
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)
Additional team:
Nodar Gogoberidze*
Ed Evans
Curtis Rueden*
* Funded by CZI
TR&D2 (algorithm accessibility)
Component leads:
Mark Hiner
Beth Cimini, PI
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)
Additional team:
Ed Evans
Alice Lucas
Curtis Rueden*
Driving Biological Projects (DBPs)
Component leads:
Beth Cimini, PI
Ellen T.A. Dobson
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)
Additional team:
David Stirling
Nasim Jamali
Pearl Ryder
Barbara Diaz-Rohrer
Jihyeon Je
Each DBP will be assigned a DBP lead from among this team
Community Engagement
Component leads:
Ellen T.A. Dobson
Beth Cimini, PI
Anne Carpenter, PI (Broad Institute)
Kevin Eliceiri, PI (U Wisc-Madison)
Additional team:
Nasim Jamali
Alice Lucas
David Stirling
Pearl Ryder
Hamdah Abbasi
Barbara Diaz-Rohrer
External Advisory Committee
The External Advisory Committiee (EAC) for the Center for Open Bioimage Analysis gives input into trends and directions for the center to pursue in our technology development, driving biological projects, and community engagement.
EAC Members:
Rick Horwitz (Chair) (Allen Institute for Cell Science)
Anna Kreshuk (EMBL Heidelberg)
Maddy Parsons (King's College London)
Emma Lundberg (KTH Royal Institute of Technology, Sweden)
Kota Miura (Max Planck BioImaging and NEUBIAS)
Badri Roysam (University of Houston)
Ross Whitaker (University of Utah)